Three experiments were performed to explore (i) the complete replacement of fish meal (FM) with a combination of fish residue meal (FRM, 65% round discarded fish + 35% byproduct), soy protein concentrate (SPC) from soymilk and corn gluten meal (CGM) in Trial 1 and (ii) the utilization of diets composed of increasing byproducts in FRM in the summer (Trial 2) and winter (Trial 3) seasons. In Trial 1, the ratio of (SPC + CGM):FM in the control diet (C) was 8:2. The FM component from diet C was replaced with FRM (diet, RM20), where the ratio of (SPC + CGM):FRM became 8:2, and this ratio was changed to 6:4, 4:6 and 2:8, and referred to as RM40, RM60 and RM80, respectively. In Trials 2 and 3, the ratios of round discarded fish and byproducts in FRM were adjusted to 65:35 (FRM1), 30:70 (FRM2) and 0:100 (FRM3), and the FRM component from diet RM40 in Trial 1 was replaced with FRM1, FRM2 and FRM3 to formulate diets RM1, RM2 and RM3, respectively. In Trials 1, 2 and 3, rearing periods were 10, 8 and 12 weeks, respectively. In Trials 1 and 3, there were no significant differences in growth parameters, nutrient retention efficiency or plasma constituents among the treatments, irrespective of the inclusion levels of FRM in the diets (p > 0.05). Although there were no significant differences in final mean weight (p > 0.05), daily feeding rate and feed conversion ratio in diet RM3 were significantly higher and lower, respectively, compared to the control group in Trial 2 (p < 0.05). These results suggest that FM can be entirely replaced with FRM, and that the total elimination of round discarded fish from FRM does not affect growth or health status in red sea bream either in summer or winter seasons.

Growth hormone (Gh) regulates somatic growth in fishes, particularly through the Gh - insulin-like growth factor-I (Igf-I) axis. In this study, recombinant Japanese eel Ghs with or without C-terminal peptides of human chorionic gonadotropin (CTP), which are known to prolong the half-life, were produced using the HEK 293 and CHO expression system. The effect of recombinant Gh administration to eel larvae on their somatic growth was investigated in short-term feeding experiments, and it was found that three types of recombinant Ghs with CTP (CTP-reGh, reGh-CTP and reGh-CTP × 2) were more effective in promoting somatic growth in eel larvae than recombinant Ghs without CTP. Among the three recombinant Ghs with CTP, reGh-CTP × 2 had the highest growth-promoting effects, however only when provided in the short term. After long-term administration of reGh-CTP × 2, there was no difference in growth between the Gh administrated group and the control group. The survival rate of eel larvae were not affected by recombinant Ghs. In addition, the mRNA expression of gh, Gh receptors, Igf-I and IGF-II were measured by quantitative real-time PCR, and significant reductions in the expression of gh, Gh receptors and Igf-I were observed. These findings provide useful tools to study the mechanisms of somatic growth and increase understanding of Gh regulation in anguillid eel larvae.

The Japanese eel (Anguilla japonica) is among the most important aquaculture fish species in Eastern Asia. The present study aimed to identify the genetic parameters underlying body size and the timing at metamorphosis from leptocephali to glass eels in captive-bred Japanese eels, with the intent to foster sustainable development. Larvae from a partly factorial cross (14 sires × 11 dams) were reared until the point of metamorphosis into glass eels. In these organisms, we observed moderate heritability and mild genetic correlations among traits related to body size (h2 = 0.16-0.33) and timing at metamorphosis (h2 = 0.36-0.41). In an F1 full-sib family, quantitative trait loci (QTL) mapping for these traits identified one significant (genome-wide P < 0.05) and five suggestive QTLs (chromosome-wide P < 0.05). These results suggest that in the Japanese eel, metamorphic traits exhibit a polygenic genetic structure comprising many QTLs with small effects. In addition, we updated the genetic linkage map for the Japanese eel and integrated it with our newly constructed de novo genome assembly. The information and tools generated from this study will contribute to the development of freshwater eel genetics and genomics.

Short-time tracking (one to eight days) of the Japanese eel (Anguilla japonica) using ultrasonic transmitter was performed in the tropical-subtropical area adjacent to the spawning area and temperate area off the Japanese Archipelago. Of 16 eels (11 wild and five farmed) used, 10 wild eels displayed clear diel vertical migration (DVM) from the beginning, while the other five farmed eels tracked for 19 to 66 hours did not. During daytime, a significantly positive correlation between migration depth and light intensity recorded on the vessel was observed in the 10 wild eels, indicating that the eels were sensitive to sunlight even at the middle to lower mesopelagic zone (500 to 800 m). During nighttime, the eel migration depth was observed to be associated with the phase, rising and setting of the moon, indicating that the eels were sensitive to moonlight at the upper mesopelagic zone (<300 m). Two of 10 wild eels were in the yellow stage but shared similar DVM with the silver stage eels. Swimbladders of three silver stage eels were punctured before releasing, but very little effect on DVM was observed. The eels very punctually initiated descent upon nautical dawn and ascent upon sunset, enabling us to determine local times for sunrise and sunset, and hence this behavior may be used for geolocating eels. In fact, estimated positions of eels based on the depth trajectory data were comparable or even better than those obtained by light-based archival tag in other fish species.

BACKGROUND: Recent advancements in next-generation sequencing technology have enabled cost-effective sequencing of whole or partial genomes, permitting the discovery and characterization of molecular polymorphisms. Double-digest restriction-site associated DNA sequencing (ddRAD-seq) is a powerful and inexpensive approach to developing numerous single nucleotide polymorphism (SNP) markers and constructing a high-density genetic map. To enrich genomic resources for Japanese eel (Anguilla japonica), we constructed a ddRAD-based genetic map using an Ion Torrent Personal Genome Machine and anchored scaffolds of the current genome assembly to 19 linkage groups of the Japanese eel. Furthermore, we compared the Japanese eel genome with genomes of model fishes to infer the history of genome evolution after the teleost-specific genome duplication. RESULTS: We generated the ddRAD-based linkage map of the Japanese eel, where the maps for female and male spanned 1748.8 cM and 1294.5 cM, respectively, and were arranged into 19 linkage groups. A total of 2,672 SNP markers and 115 Simple Sequence Repeat markers provide anchor points to 1,252 scaffolds covering 151 Mb (13%) of the current genome assembly of the Japanese eel. Comparisons among the Japanese eel, medaka, zebrafish and spotted gar genomes showed highly conserved synteny among teleosts and revealed part of the eight major chromosomal rearrangement events that occurred soon after the teleost-specific genome duplication. CONCLUSIONS: The ddRAD-seq approach combined with the Ion Torrent Personal Genome Machine sequencing allowed us to conduct efficient and flexible SNP genotyping. The integration of the genetic map and the assembled sequence provides a valuable resource for fine mapping and positional cloning of quantitative trait loci associated with economically important traits and for investigating comparative genomics of the Japanese eel.

We studied the profiles of thyroid hormone receptors (TRs) in Japanese eels (Anguilla japonica) during development from hatched larvae to juveniles. Two TRαs (TRαA and TRαB) and one TRβ (TRβA) cDNA clones were generated by RACE. The TRαA, TRαB and TRβA cDNAs encoded 416, 407 and 397 amino acid proteins with much higher homologies to the Japanese conger eel (Conger myriaster) TRs than to other fish TRs. In a transiently transfected Japanese eel cell line, Hepa-E1, the TRs showed thyroid hormone (TH)-dependent activation of transcription from the TH-responsive promoter. Four TR cDNA clones, including TRβB reported in a previous study, were analyzed by real-time RT-PCR. The TR mRNA levels in hatched larvae were determined. The two TRβ mRNAs were present at low levels but there was a peak in the TRαs during the larval stage before metamorphosis. During metamorphosis, the two TRαs both exhibited peaks and expression of the two TRβs was higher than during the early growth stage. This expression pattern is similar to that of the Japanese conger eel. It is possible that thyroid hormones control the early development of Japanese eels and Japanese conger eels through TRs. This is the first analysis of the expression sequence of TRs during early larval stages of Anguilliformes.

The pancreatic digestive enzymes, trypsin, chymotrypsin, lipase and amylase were partially characterized, and changes in their activities were examined during the initial ontogeny of Japanese eel Anguilla japonica larvae from 5 to 34 days post-hatching (dph). The pH optima of the eel larval enzymes were narrower than those other fish species; trypsin activity was highest at pH 9, chymotrypsin and amylase activities were highest at pH 7 and 8, and lipase activity was highest at pH 8 and 9. In an analysis of thermal profiles, the larval pancreatic enzymes had a high optimal temperature and high thermal stability, which are typical of fish from the tropics. At 12 and 13 dph, lipase activity and gene expression levels of trypsin (-a and -b), lipase and amylase decreased markedly, suggesting a marked change in larval metabolism at that time. These data could be useful in the development of artificial larval diets in Japanese eel.

Pepsinogen is the precursor form of the gastric-specific digestive enzyme, pepsin. Ghrelin is a representative gastric hormone with multiple functions in vertebrates, including the regulation of growth hormone release, stimulation of food intake and gastrointestinal motility function. We investigated chronological changes in the distribution of pepsinogen-expressing cells by in situ hybridization and ghrelin-immunoreactive cells by immunohistochemistry in the Japanese eel (Anguilla japonica) during metamorphosis from the leptocephalus sage to the elver stage. The ghrelin-producing cells first appeared in the gastric cecum and pyloric portion of the stomach in the late phase of metamorphosing leptocephali, whereas the pepsinogen-producing cells were first detected in the early phase of the glass-eel stage. These suggest that endocrine cells differentiated earlier than exocrine cells in the eel stomach. Accompanying eel development, the distribution of ghrelin-producing cells spread to the esophagus and other regions of the stomach, but not to the intestine. These results may be related to the changes in dietary habits during metamorphosis in the Japanese eel.

The natural reproductive ecology of freshwater eels remained a mystery even after some of their offshore spawning areas were discovered approximately 100 years ago. In this study, we investigate the spawning ecology of freshwater eels for the first time using collections of eggs, larvae and spawning-condition adults of two species in their shared spawning area in the Pacific. Ovaries of female Japanese eel and giant mottled eel adults were polycyclic, suggesting that freshwater eels can spawn more than once during a spawning season. The first collection of Japanese eel eggs near the West Mariana Ridge where adults and newly hatched larvae were also caught shows that spawning occurs during new moon periods throughout the spawning season. The depths where adults and newly hatched larvae were captured indicate that spawning occurs in shallower layers of 150-200 m and not at great depths. This type of spawning may reduce predation and facilitate reproductive success.

Primordial germ cells (PGCs) are segregated and specified from somatic cells during early development. These cells arise elsewhere and have to migrate across the embryo to reach developing gonadal precursors. Several molecules associated with PGC migration (i.e. dead-end, nanos1, and cxcr4) are highly conserved across phylum boundaries. However, since cell migration is a complicated process that is regulated spatially and temporally by multiple adaptors and signal effectors, the process is unlikely to be explained by these known genes only. Indeed, it has been shown that there are variations in PGC migration pattern during development among teleost species. However, it is still unclear whether the actual mechanism of PGC migration is conserved among species. In this study, we studied the migration of PGCs in Japanese eel (Anguilla japonica) embryos and tested the migration mechanism between Japanese eel and zebrafish (Danio rerio) for conservation, by transplanting eel PGCs into zebrafish embryos. The experiments showed that eel PGCs can migrate toward the gonadal region of zebrafish embryos along with endogenous PGCs, even though the migration patterns, behaviors, and settlements of PGCs are somewhat different between these species. Our results demonstrate that the migration mechanism of PGCs during embryonic development is highly conserved between these two distantly related species (belonging to different teleost orders).

Polymerase chain reaction (PCR)-clamping using blocking primer and DNA-analogs, such as peptide nucleotide acid (PNA), may be used to selectively amplify target DNA for molecular diet analysis. We investigated PCR-clamping efficiency by studying PNA position and mismatch with complementary DNA by designing PNAs at five different positions on the nuclear rDNA internal transcribed spacer 1 of the Japanese eel Anguilla japonica in association with intra-specific nucleotide substitutions. All five PNAs were observed to efficiently inhibit amplification of a fully complementary DNA template. One mismatch between PNA and template DNA inhibited amplification of the template DNA, while two or more mismatches did not. DNA samples extracted from dorsal muscle and intestine of eight wild-caught leptochephalus larvae were subjected to this analysis, followed by cloning, nucleotide sequence analysis, and database homology search. Among 12 sequence types obtained from the intestine sample, six were identified as fungi. No sequence similarities were found in the database for the remaining six types, which were not related to one another. These results, in conjunction with our laboratory observations on larval feeding, suggest that eel leptocephali may not be dependent upon living plankton for their food source.

In a previous study, we identified cDNAs encoding the growth hormone receptor (eGHR1) and eGHR1 homologue (eGHR2) in Japanese eel (Anguilla japonica). In the present study, changes in the developmental expression of growth hormone (GH), eGHR1 and eGHR2 were investigated in the Japanese eel eggs and preleptocephali by RT-PCR and immunohistochemical methods in an attempt to examine the involvement of these proteins in larval growth. The GH transcripts and the production of GH protein were not detected in the newly hatched larvae and preleptocephali at day 3 post-hatch, however, these were detected at day 6 post-hatch, and also detected at higher levels at day 10 post-hatch. In contrast, prolactin and somatolactin transcripts could not be detected in all preleptocephalus specimens (newly hatched larvae and preleptocephali at day 3, 6 and 10 post-hatch). eGHR1 and eGHR2 transcripts were detected in all preleptocephalus specimens. Therefore, it is plausible that the actions of GH during the preleptocephalus stage are mediated through the eGHRs. The present data suggest that GHR-mediated actions of GH begin at the same time as the initiation of GH production, and that GH plays important roles in larval growth and survival to the leptocephalus stage. eGHR1 mRNA, which is thought to be of maternal origin, was also detected in ovulated eggs. However, the role of eGHR1 mRNA in eggs is not clear.

Genetic improvement of the Japanese eel (Anguilla japonica) can be achieved by artificially controlling its life cycle using recent advances in reproductive biology. In this study, we developed 43 microsatellite loci to confirm Mendelian inheritance at 10 of them as well at 16 previously reported in two full-sib families produced by artificial insemination. In order to establish a base for aquaculture genetics of this species in the near future, these microsatellite loci were mapped in relation to the centromere by half-tetrad analysis using four artificially induced triploid families. The second division segregation frequency (y) of the microsatellite loci ranged from 0.008 to 0.968 (mean ± SD = 0.645 ± 0.298). These results suggest the presence of strong chiasma interference in the eel. Significant differences were observed for the map distances of microsatellite loci between the two isolation procedures. Microsatellites isolated using the enrichment procedure were mapped to various sites starting from the centromere to the telomere, whereas those from the conventional size-selected library showed a tendency to be distributed in the telomeric region.

As part of a study on the early life of Japanese eel, the development of the digestive organs was observed during the 13 d after hatching. The digestive tract was formed only at the pharynx at hatching; the posterior part of the duct differentiated during 1 d posthatch (DPH). Pancreas and liver started to develop at 3 DPH. Immunohistochemistry using an antibody to eel trypsinogen showed weak signals first appearing in the pancreas at 6 DPH, suggesting that the eel pancreas starts to synthesize digestive enzymes at 6 DPH. The immunohistochemical signals became strong at 7 DPH, at which time the mouth opening orientation moved from ventral to anterior, the intestine differentiated into small intestine and rectum and the yolk was absorbed. Rotifers were first observed in the digestive tract of 13-d-old larvae. We inferred from the developmental process of the digestive organs that the larvae can start feeding at 7 DPH, which is earlier than observations of first feeding.

The two gonadotropins, follicle stimulating hormone (FSH) and luteinizing hormone (LH), play pivotal roles in the puberty in fish. We have newly established the method for measuring the FSH of the red seabream and elucidated the seasonal changes of FSH concentrations in the plasma of the red seabream with this method. Also, we found that gonadotropin-releasing hormone stimulates LH secretion but does not stimulate FSH secretion from the pituitary in the red seabream through the several in vivo and in vitro studies. In addition, we have established two stable cell lines that secrete FSH and LH of the red seabream, respectively and succeeded in obtaining sufficient amount of recombinant hormones (30 - 60 mg) that can be utilized for the studies for artificial induction of sexual maturation in fish.